publications

Stay tuned for publications from The Prakash Lab!


*denotes equal contribution †denotes co-corresponding authors


Myelin pathology is a key feature of X-linked Dystonia Parkinsonism.
Prakash P†, Limberg KC*, Zhang W*, Zhao Y, Laborc KF, O'Keeffe A, Vilnaigre BC, Appleby H, O'Dea MR, Fernandez-Cerado C, Legarda GPA, Sy M, Muñoz EL, Ang MAC, Diesta CCE, Han J, Norenberg E, Penney EB, Bragg DC, Mar AC, Brosh R, Boeke JD, Liddelow SA†.
bioRxiv [Preprint]. 2025 Oct 8:2025.10.07.680990.
doi: 10.1101/2025.10.07.680990. PMID: 41278988; PMCID: PMC12632464.


Genome writing to dissect consequences of SVA retrotransposon disease X-Linked Dystonia Parkinsonism.
Zhang W, Zhao Y*, Prakash P*, Appleby HL, Barriball K, Capponi S, Jiang Q, Wudzinska AM, Vaine CA, Ellis G, Rahman N, Markovic S, Mishkit O, Limberg KC, Maurano MT, Wadghiri YZ, Kim SY, Timmers HTM, Bragg DC, Liddelow SA, Brosh R, Boeke JD.
bioRxiv [Preprint]. 2025 Oct 8:2025.10.07.680816.
doi: 10.1101/2025.10.07.680816. PMID: 41279153; PMCID: PMC12632633.


Advances in the genetics and pathology of Lewy body dementia.
Scholz SW, Okubadejo NU, Prakash P, Liddelow SA, Ryten M, Halliday GM.
Lancet Neurol. 2025 Dec;24(12):1026-1037.
doi: 10.1016/S1474-4422(25)00363-1. PMID: 41240918.


Single-cell analysis of the nervous system at small and large scales with instant partitions.
Frazel PW, Fricano-Kugler K, May-Zhang AA, O'Dea MR, Prakash P, Desmet NM, Lee H, Meltzer RH, Fontanez KM, Hettige P, Agam Y, Lithwick-Yanai G, Lipson D, Luikart BW, Dasen JD, Liddelow SA.
bioRxiv [Preprint]. 2023 Jul 18:2023.07.14.549051.
doi: 10.1101/2023.07.14.549051. PMID: 37503160; PMCID: PMC10370061.


Proteomic profiling of interferon-responsive reactive astrocytes in rodent and human.
Prakash P†, Erdjument-Bromage H, O'Dea MR, Munson CN, Labib D, Fossati V, Neubert TA, Liddelow SA†.
Glia. 2024 Mar;72(3):625-642.
doi: 10.1002/glia.24494. Epub 2023 Nov 30. PMID: 38031883; PMCID: PMC10843807.


Proteomic Alterations and Novel Markers of Neurotoxic Reactive Astrocytes in Human Induced Pluripotent Stem Cell Models.
Labib D, Wang Z, Prakash P, Zimmer M, Smith MD, Frazel PW, Barbar L, Sapar ML, Calabresi PA, Peng J, Liddelow SA, Fossati V.
Front Mol Neurosci. 2022 May 3;15:870085.
doi: 10.3389/fnmol.2022.870085. PMID: 35592112; PMCID: PMC9113221.


Lipids: Emerging Players of Microglial Biology.
Prakash P†, Randolph CE, Walker KA, Chopra G†.
Glia. 2025 Mar;73(3):657-677.
doi: 10.1002/glia.24654. Epub 2024 Dec 17. PMID: 39688320; PMCID: PMC11784843.


Amyloid-β induces lipid droplet-mediated microglial dysfunction via the enzyme DGAT2 in Alzheimer's disease.
Prakash P*, Manchanda P*, Paouri E, Bisht K, Sharma K, Rajpoot J, Wendt V, Hossain A, Wijewardhane PR, Randolph CE, Chen Y, Stanko S, Gasmi N, Gjojdeshi A, Card S, Fine J, Jethava KP, Clark MG, Dong B, Ma S, Crockett A, Thayer EA, Nicolas M, Davis R, Hardikar D, Allende D, Prayson RA, Zhang C, Davalos D, Chopra G.
Immunity. 2025 Jun 10;58(6):1536-1552.e8.
doi: 10.1016/j.immuni.2025.04.029. Epub 2025 May 19. PMID: 40393454; PMCID: PMC12168635.

One Scaffold, Different Organelle Sensors: pH-Activable Fluorescent Probes for Targeting Live Microglial Cell Organelles.
Jethava KP*, Prakash P*, Manchanda P, Arora H, Chopra G.
Chembiochem. 2022 May 4;23(9):e202100378.
doi: 10.1002/cbic.202100378. Epub 2021 Oct 13. PMID: 34585478; PMCID: PMC9835645.

  • Selected for Front Cover Feature, Issue 9, Vol 23, 2022

Neurotoxic reactive astrocytes induce cell death via saturated lipids.
Guttenplan KA, Weigel MK*, Prakash P*, Wijewardhane PR, Hasel P, Rufen-Blanchette U, Münch AE, Blum JA, Fine J, Neal MC, Bruce KD, Gitler AD, Chopra G, Liddelow SA, Barres BA.
Nature. 2021 Nov;599(7883):102-107.
doi: 10.1038/s41586-021-03960-y. Epub 2021 Oct 6. PMID: 34616039; PMCID: PMC12054010.

Monitoring phagocytic uptake of amyloid β into glial cell lysosomes in real time.
Prakash P*, Jethava KP*, Korte N*, Izquierdo P*, Favuzzi E, Rose IVL, Guttenplan KA, Manchanda P, Dutta S, Rochet JC, Fishell G, Liddelow SA, Attwell D, Chopra G.
Chem Sci. 2021 Jul 21;12(32):10901-10918.
doi: 10.1039/d1sc03486c. PMID: 34476070; PMCID: PMC8372545.


Rapid, Refined, and Robust Method for Expression, Purification, and Characterization of Recombinant Human Amyloid beta 1-42.
Prakash P*, Lantz TC*, Jethava KP, Chopra G.
Methods Protoc. 2019 Jun 7;2(2):48.
doi: 10.3390/mps2020048. PMID: 31181684; PMCID: PMC6632169.

Proposed cover (unpublished).
Art by drawimpacts.

Published cover. Art by Ryann Davis (undergrad, Chopra lab).

publication access

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